Interesting since I only installed my original RStudio about 2 weeks ago :-) Thanks for your help. Does the order of validations and MAC with clear text matter? Start a fresh R session with no packages loaded. I was finally able to install Hmisc after what could be called a brute-force recursive installation of whatever packages were noted as needing updated in a given error message for a package installation. Simple deform modifier is deforming my object, Copy the n-largest files from a certain directory to the current one, Embedded hyperlinks in a thesis or research paper. Find centralized, trusted content and collaborate around the technologies you use most. Passing negative parameters to a wolframscript. You are receiving this because you authored the thread. Package 'Hmisc' installed, but error when trying 'library' to activate? The weird thing is that I have downloaded the big data lite (4.4) image and can install packages without any errors. > install.packages("tidyr")Installing package into /home/username/R/x86_64-unknown-linux-gnu-library/3.1(as lib is unspecified)Warning in install.packages : dependencies tibble, dplyr are not available. message "/rms_4.3-1.zip' is not available (for R version 3.2.0)" seems to indicate that there's something needed when building the packages to specify that they work with R 3.2.0. It also looks like you are still using R 3.5. Well occasionally send you account related emails. not occuring on linux or windows to my knowledge. This topic was automatically closed 7 days after the last reply. Install the development files for liblapack, libblas, and libjpeg. this is a website that can give you an introduction if you are interested. But avoid . tidyverts/fable#107, This may have been resolved in some of the R updates since this was originally posted. There is a binary version available but the source version is later: binary source needs_compilation Hmisc 4.3-1 4.4-0 TRUE Do you want to install from sources the package which needs compilation? installation of package 'hmisc' had non zero exit status. Once you get .libPaths pointing to the right directory, you have a couple of methods of updating packages. I've used: What is Wario dropping at the end of Super Mario Land 2 and why? This manually install helped me out. I'm learning and will appreciate any help, Image of minimal degree representation of quasisimple group unique up to conjugacy, Passing negative parameters to a wolframscript, Simple deform modifier is deforming my object. Then, I install Rstudio using anaconda. Find centralized, trusted content and collaborate around the technologies you use most. trying URL 'https://repo.bppt.go.id/cran/bin/windows/contrib/3.4/Hmisc_4.0-3.zip' Hi there, I have some problems installing the package Hmisc. Is there any known 80-bit collision attack? Have a question about this project? Some packages like, http://ftp5.gwdg.de/pub/misc/cran/src/contrib/tidyr_0.6.0.tar.gz. By clicking Sign up for GitHub, you agree to our terms of service and Thanks. Can someone help me ? Sign in I haven't seen anything that would suggest Hmisc is at fault. @couthcommander -- you are correct! RStudio Version: 0.98.1091 (I think 64bit) If you continue to be unable to update haven, browse to your library folder and delete the haven folder and install it fresh. Content Discovery initiative April 13 update: Related questions using a Review our technical responses for the 2023 Developer Survey, Folder's list view has different sized fonts in different folders, Image of minimal degree representation of quasisimple group unique up to conjugacy. Reply to this email directly or view it on GitHub I can't install packages in R(studio) in the cloud.When I sayinstall.packages( Then, install labbelled manually. Well occasionally send you account related emails. I updated RStudio to Version 0.99.473. But its instantiation with the library command fails. I am able to install Hmisc 4.1-1 source on macos sierra (10.12.6). Asking for help, clarification, or responding to other answers. Warning in install.packages : Sign in installing the source package Hmisc, trying URL 'https://cran.rstudio.com/src/contrib/Hmisc_4.4-0.tar.gz' Generating points along line with specifying the origin of point generation in QGIS. To subscribe to this RSS feed, copy and paste this URL into your RSS reader. I get the warning: package F:/Temp/Hmisc_3.16-0.zip is not available (for R version 3.2.2). Making statements based on opinion; back them up with references or personal experience. Some packages like tseries or colorspace can be installed, but others can't. also installing the dependency rms, trying URL 'http://cran.rstudio.com/bin/windows/contrib/3.2/rms_4.3-0.zip' Please be sure to answer the question.Provide details and share your research! /usr/bin/ld: cannot find -llapack: No such file or directory If you start a new R session without bioconductor loaded, I assume you can load Hmisc successfully? Why did DOS-based Windows require HIMEM.SYS to boot? You signed in with another tab or window. . backports install was done with R CMD INSTALL backports_1.1.2.tar.gz, Hmisc install was attempted with R CMD INSTALL Hmisc_4.1-1.tar.gz, Be sure to work with the package maintainer for htmlTable to resolve this, Failure to install in RStudio Version 1.1.412 on Intel Mac OS X 10_11_6. Unable to Install latest build of Hmisc package for R 3.2.0, http://cran.rstudio.com/bin/windows/contrib/3.2/rms_4.3-0.zip, http://cran.rstudio.com/bin/windows/contrib/3.2/Hmisc_3.15-0.zip, http://cran.rstudio.com/bin/windows/contrib/3.2, http://cran.rstudio.com/bin/windows/contrib/3.2/Hmisc_3.16-0.zip, This was a fresh install of RStudio Version 0.99.903 on a 34-bit GNU/Linux OS. As an aside, in the world of biological sequence data and the need to analyze, bioconductor is a means by which to get that job done and to scale efficiently. I couldn't get the solutions above to work, but the problem resolved when I updated to R 4.1.1. My best guess is that the Mac users should try re-installing gfortran. And yes, the file /Library/Frameworks/R.framework/Resources/etc/Makeconf does exist on the system, including the flag FLIBS: FLIBS = -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm. There are missing libraries in the actual backend that R needs for the front-end. dependencies survival, latticeExtra are not available, There is a binary version available but the source version is later: binary source needs_compilation https://www.bioconductor.org/help/course-materials/2016/BiocIntro-May/. Connect and share knowledge within a single location that is structured and easy to search. To learn more, see our tips on writing great answers. Then, install labbelled manually. Error in library("Hmisc"): there is no package called 'Hmisc', How a top-ranked engineering school reimagined CS curriculum (Ep. Does anyone know what might has happened? I believe @adeslatt and @stuzog (Mac users) are encountering a different installation problem than @StatsQuo. downloaded 727 KB, ERROR: dependency latticeExtra is not available for package Hmisc, The downloaded source packages are in C:\Users\user\AppData\Local\Temp\RtmpWGOFzV\downloaded_packages, library("Hmisc") I'm surprised that there is not more information in the warning messages. Hmisc 4.1-1 4.4-0 TRUE, Do you want to install from sources the package which needs compilation? The text was updated successfully, but these errors were encountered: I get a similar issue trying to download and install rms directly, install.packages(pkgs="C:/Users/Erik/Downloads/rms_4.3-1.zip" , lib="C:/Users/Erik/Documents/R/win-library/3.2") New comments cannot be posted to this locked post. rev2023.5.1.43405. Thanks! 4: In install.packages("UsingR") : Any help is appreciated as I am trying to solve this problem for days now. Thanks for contributing an answer to Stack Overflow! A different version does exists when I browse the link: 'http://cran.rstudio.com/bin/windows/contrib/3.2/Hmisc_3.16-0.zip', message "/rms_4.3-1.zip is not available (for R version 3.2.0)" seems to indicate that there's something needed when building the packages to specify that they work with R 3.2.0, OS: Windows 8.1 64bit I'll look for a Mac user to give us the general solution. binaryR install.packages ("xx",type="binary") had non-zero exit status . failed with this error to your account. Error in download.file(url, destfile, method, mode = "wb", ) : How should I solve error there is no package called rspatial? downloaded 1.7 MB, package Hmisc successfully unpacked and MD5 sums checked, The downloaded binary packages are in 565), Improving the copy in the close modal and post notices - 2023 edition, New blog post from our CEO Prashanth: Community is the future of AI. <. Why did US v. Assange skip the court of appeal? @adeslatt I'm not familiar with Bioconductor at all. Finally, try to install questionr again. to your account, I was able to download and install all dependencies for Hmisc but when it came time to actually install Hmisc it failed. cannot open: HTTP status was '404 Not Found' (as lib is unspecified) Whatever bug seems to have been resolved in the RStudio update. When I tried to manually download and install Hmisc_3.16-0.zip I get the following error: install.packages(pkgs="C:/Users/Erik/Downloads/Hmisc_3.16-0.zip" , lib="C:/Users/Erik/Documents/R/win-library/3.2") y/n: y Since updating RStudio to 1.1.414 Hmisc 4.1-1 now installs from CRAN. wrote: @GitKlip https://github.com/GitKlip I am having exactly the same issue is not showing as an issue on Github. @GitKlip I am having exactly the same issue on Windows 10, same error messages and ultimately the installation fails. Try just. Image of minimal degree representation of quasisimple group unique up to conjugacy. biocLite("biovizBase") I E.g., when install.packages("Hmisc") returned: I'd try to install rpart. Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide, "installation of package 'Hmisc' had non-zero exit status" means that Hmisc did not install properly. Were I to have known all the packages to install and the order to do so, the R . g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o RcppEigen.so RcppEigen.o RcppExports.o fastLm.o init.o -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR Finally, try to install questionr again. @neilfws, I edited the question. Loading required package: lattice Looking on the net I'm not seeing many people having problems with it. If you continue to be unable to update haven, browse to your library folder and delete the haven folder and install it fresh. This problem is not occuring on linux or windows to my knowledge. To learn more, see our tips on writing great answers. This problem is Do you have any idea whats the matter here? The current R version is 4.0.2. Hello -- Hmisc fails to compile for me as well. The warning and error are as follows: PS. Content Discovery initiative April 13 update: Related questions using a Review our technical responses for the 2023 Developer Survey, Installation of packages stringr and stringi had non-zero exit status, Installation of package forecast had non-zero exit status, Installing rsymphony package for r (non-zero exit status), Error in installing *install.packages("tstools")* in language R, I am unable to install ggplot, there occurs some error. The only experience I have with those issues are that I had to make sure I was using the latest version of R and the latest version of RStudio so that install.packages would install the very latest Hmisc. Warning in install.packages : With no details there is nothing I can do, and I don't understand why this -installing backports. Why? Already on GitHub? 3: In install.packages("UsingR") : installation of package 'SparseM' had non-zero exit status.